From ab21c69057389efaab48968c661b02b6a66a8aa1 Mon Sep 17 00:00:00 2001
From: Peder Bergebakken Sundt <pbsds@hotmail.com>
Date: Sat, 3 May 2025 23:31:48 +0200
Subject: [PATCH 1/2] autodock-vina: pin boost

---
 pkgs/applications/science/chemistry/autodock-vina/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/chemistry/autodock-vina/default.nix b/pkgs/applications/science/chemistry/autodock-vina/default.nix
index a084459cc1d7..9225c94c9419 100644
--- a/pkgs/applications/science/chemistry/autodock-vina/default.nix
+++ b/pkgs/applications/science/chemistry/autodock-vina/default.nix
@@ -2,11 +2,11 @@
   lib,
   stdenv,
   fetchFromGitHub,
-  boost,
+  boost186,
   glibc,
 }:
 let
-  boost' = boost.override {
+  boost' = boost186.override {
     enableShared = false;
   };
 in

From 2cba7337ec15363dce94faf1ce24641cf84448fd Mon Sep 17 00:00:00 2001
From: Peder Bergebakken Sundt <pbsds@hotmail.com>
Date: Sat, 3 May 2025 21:58:35 +0200
Subject: [PATCH 2/2] autodock-vina: 1.2.6 -> 1.2.7

fixes https://hydra.nixos.org/build/285986633
---
 .../science/chemistry/autodock-vina/default.nix             | 6 ++++--
 .../science/chemistry/autodock-vina/python-bindings.nix     | 5 ++++-
 2 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/science/chemistry/autodock-vina/default.nix b/pkgs/applications/science/chemistry/autodock-vina/default.nix
index 9225c94c9419..4720d536351e 100644
--- a/pkgs/applications/science/chemistry/autodock-vina/default.nix
+++ b/pkgs/applications/science/chemistry/autodock-vina/default.nix
@@ -12,13 +12,13 @@ let
 in
 stdenv.mkDerivation (finalAttrs: {
   pname = "autodock-vina";
-  version = "1.2.6";
+  version = "1.2.7";
 
   src = fetchFromGitHub {
     owner = "ccsb-scripps";
     repo = "autodock-vina";
     tag = "v${finalAttrs.version}";
-    hash = "sha256-Y0whqBecZt5D/5HEfL005rCq4lAJTr2mUxy5rygCEtc=";
+    hash = "sha256-AQJl/EUAkdIQJZSN27sbjG7dYbQxeEb8Pd+p2kKRnvA=";
   };
 
   sourceRoot = "${finalAttrs.src.name}/build/${
@@ -47,6 +47,8 @@ stdenv.mkDerivation (finalAttrs: {
     runHook postInstall
   '';
 
+  passthru.boost = boost';
+
   meta = with lib; {
     description = "One of the fastest and most widely used open-source docking engines";
     homepage = "https://vina.scripps.edu/";
diff --git a/pkgs/applications/science/chemistry/autodock-vina/python-bindings.nix b/pkgs/applications/science/chemistry/autodock-vina/python-bindings.nix
index 2fa26286e53f..2b57a7d3f89b 100644
--- a/pkgs/applications/science/chemistry/autodock-vina/python-bindings.nix
+++ b/pkgs/applications/science/chemistry/autodock-vina/python-bindings.nix
@@ -2,12 +2,15 @@
   lib,
   buildPythonPackage,
   autodock-vina,
-  boost,
   swig,
   setuptools,
   numpy,
 }:
 
+let
+  inherit (autodock-vina) boost;
+in
+
 buildPythonPackage {
   inherit (autodock-vina)
     pname