diff --git a/pkgs/development/python-modules/pykdtree/default.nix b/pkgs/development/python-modules/pykdtree/default.nix
index 0ba615277e36..46e4b24ceef6 100644
--- a/pkgs/development/python-modules/pykdtree/default.nix
+++ b/pkgs/development/python-modules/pykdtree/default.nix
@@ -1,25 +1,51 @@
-{ lib, buildPythonPackage, fetchPypi, numpy, pytestCheckHook, openmp }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+
+# build-system
+, cython_3
+, numpy
+, setuptools
+
+# native dependencies
+, openmp
+
+# tests
+, pytestCheckHook
+}:
 
 buildPythonPackage rec {
   pname = "pykdtree";
-  version = "1.3.7.post0";
-  format = "setuptools";
+  version = "1.3.10";
+  pyproject = true;
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-7KHWHTPbYh74An62ka6I25xl0ZarpLLMkMGQy5C7UI4=";
+    hash = "sha256-QefF1mnK3CGIrMS7tLC03K9JLYRRLx5lF6erLRIskR0=";
   };
 
-  buildInputs = [ openmp ];
+  nativeBuildInputs = [
+    cython_3
+    numpy
+    setuptools
+  ];
 
-  propagatedBuildInputs = [ numpy ];
+  buildInputs = [
+    openmp
+  ];
+
+  propagatedBuildInputs = [
+    numpy
+  ];
 
   preCheck = ''
     # make sure we don't import pykdtree from the source tree
     mv pykdtree tests
   '';
 
-  nativeCheckInputs = [ pytestCheckHook ];
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
 
   meta = with lib; {
     description = "kd-tree implementation for fast nearest neighbour search in Python";