diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 62a0a29bc07b..165fb180f6ca 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -12961,7 +12961,7 @@
     name = "Merlin Humml";
   };
   mguentner = {
-    email = "code@klandest.in";
+    email = "code@mguentner.de";
     github = "mguentner";
     githubId = 668926;
     name = "Maximilian Güntner";
diff --git a/nixos/modules/system/boot/initrd-ssh.nix b/nixos/modules/system/boot/initrd-ssh.nix
index cbeec4588f59..650ce593e945 100644
--- a/nixos/modules/system/boot/initrd-ssh.nix
+++ b/nixos/modules/system/boot/initrd-ssh.nix
@@ -166,6 +166,10 @@ in
         UseDNS no
       ''}
 
+      ${optionalString (!config.boot.initrd.systemd.enable) ''
+        SshdSessionPath /bin/sshd-session
+      ''}
+
       ${cfg.extraConfig}
     '';
   in mkIf enabled {
@@ -191,6 +195,7 @@ in
 
     boot.initrd.extraUtilsCommands = mkIf (!config.boot.initrd.systemd.enable) ''
       copy_bin_and_libs ${package}/bin/sshd
+      copy_bin_and_libs ${package}/libexec/sshd-session
       cp -pv ${pkgs.glibc.out}/lib/libnss_files.so.* $out/lib
     '';
 
@@ -265,7 +270,10 @@ in
             config.boot.initrd.network.ssh.authorizedKeys ++
             (map (file: lib.fileContents file) config.boot.initrd.network.ssh.authorizedKeyFiles));
       };
-      storePaths = ["${package}/bin/sshd"];
+      storePaths = [
+        "${package}/bin/sshd"
+        "${package}/libexec/sshd-session"
+      ];
 
       services.sshd = {
         description = "SSH Daemon";
diff --git a/pkgs/applications/blockchains/ledger-live-desktop/default.nix b/pkgs/applications/blockchains/ledger-live-desktop/default.nix
index 36344bf1a6e1..5f8b95411e99 100644
--- a/pkgs/applications/blockchains/ledger-live-desktop/default.nix
+++ b/pkgs/applications/blockchains/ledger-live-desktop/default.nix
@@ -2,11 +2,11 @@
 
 let
   pname = "ledger-live-desktop";
-  version = "2.81.2";
+  version = "2.83.0";
 
   src = fetchurl {
     url = "https://download.live.ledger.com/${pname}-${version}-linux-x86_64.AppImage";
-    hash = "sha256-dnlIIOOYmCN209avQFMcoekB7nJpc2dJnS2OBI+dq7E=";
+    hash = "sha256-W7K6jRM248PCsUEVhIPeb2em70QwKJ/20RgKzuwj29g=";
   };
 
   appimageContents = appimageTools.extractType2 {
diff --git a/pkgs/applications/editors/vim/plugins/generated.nix b/pkgs/applications/editors/vim/plugins/generated.nix
index 213806b2f402..f6809c3db646 100644
--- a/pkgs/applications/editors/vim/plugins/generated.nix
+++ b/pkgs/applications/editors/vim/plugins/generated.nix
@@ -17515,5 +17515,17 @@ final: prev:
     meta.homepage = "https://github.com/jhradilek/vim-snippets/";
   };
 
+  Preview-nvim = buildVimPlugin {
+    pname = "Preview.nvim";
+    version = "2024-06-01";
+    src = fetchFromGitHub {
+      owner = "henriklovhaug";
+      repo = "Preview.nvim";
+      rev = "388882f3bfd09bcb0d5b4ab3d0fa5bc2dacbbc2e";
+      sha256 = "sha256-Tnl2TkLY9QXk/5qX2LcX5G2aq/sysH6BnD2YqXlneIU=";
+    };
+    meta.homepage = "https://github.com/henriklovhaug/Preview.nvim/";
+  };
+
 
 }
diff --git a/pkgs/applications/editors/vim/plugins/overrides.nix b/pkgs/applications/editors/vim/plugins/overrides.nix
index f2d7640a83e1..727962f8340b 100644
--- a/pkgs/applications/editors/vim/plugins/overrides.nix
+++ b/pkgs/applications/editors/vim/plugins/overrides.nix
@@ -79,6 +79,8 @@
 , CoreServices
 , # nvim-treesitter dependencies
   callPackage
+, # Preview-nvim dependencies
+  md-tui
 , # sg.nvim dependencies
   darwin
 , # sved dependencies
@@ -1275,6 +1277,15 @@
     nvimRequireCheck = "plenary";
   };
 
+  Preview-nvim = super.Preview-nvim.overrideAttrs {
+    patches = [
+      (substituteAll {
+        src = ./patches/preview-nvim/hardcode-mdt-binary-path.patch;
+        mdt = lib.getExe md-tui;
+      })
+    ];
+  };
+
   range-highlight-nvim = super.range-highlight-nvim.overrideAttrs {
     dependencies = with self; [ cmd-parser-nvim ];
   };
diff --git a/pkgs/applications/editors/vim/plugins/patches/preview-nvim/hardcode-mdt-binary-path.patch b/pkgs/applications/editors/vim/plugins/patches/preview-nvim/hardcode-mdt-binary-path.patch
new file mode 100644
index 000000000000..e8082f51c370
--- /dev/null
+++ b/pkgs/applications/editors/vim/plugins/patches/preview-nvim/hardcode-mdt-binary-path.patch
@@ -0,0 +1,22 @@
+diff --git a/lua/preview.lua b/lua/preview.lua
+index 6d9875d..729cc70 100644
+--- a/lua/preview.lua
++++ b/lua/preview.lua
+@@ -28,7 +28,7 @@ local function open_window(file)
+ 	vim.env.MDT_WIDTH = width
+ 
+ 	vim.cmd.vnew()
+-	vim.fn.termopen("mdt " .. file)
++	vim.fn.termopen("@mdt@ " .. file)
+ 
+ 	vim.cmd("setlocal nonumber norelativenumber")
+ 	vim.api.nvim_feedkeys("a", "t", false)
+@@ -49,7 +49,7 @@ end
+ function M.setup()
+ 	-- Check if "mdt" is installed
+ 	if vim.fn.executable("mdt") == 0 then
+-		install()
++		-- install()
+ 	end
+ 
+ 	set_cmd()
diff --git a/pkgs/applications/editors/vim/plugins/vim-plugin-names b/pkgs/applications/editors/vim/plugins/vim-plugin-names
index 98f71881c900..75dd02f39622 100644
--- a/pkgs/applications/editors/vim/plugins/vim-plugin-names
+++ b/pkgs/applications/editors/vim/plugins/vim-plugin-names
@@ -21,6 +21,7 @@ https://github.com/numToStr/Navigator.nvim/,,
 https://github.com/overcache/NeoSolarized/,,
 https://github.com/chrisbra/NrrwRgn/,,
 https://github.com/vim-scripts/PreserveNoEOL/,,
+https://github.com/henriklovhaug/Preview.nvim/,HEAD,
 https://github.com/yssl/QFEnter/,,
 https://github.com/chrisbra/Recover.vim/,,
 https://github.com/vim-scripts/Rename/,,
diff --git a/pkgs/applications/graphics/shotwell/default.nix b/pkgs/applications/graphics/shotwell/default.nix
index 844878a34959..8185f59c7452 100644
--- a/pkgs/applications/graphics/shotwell/default.nix
+++ b/pkgs/applications/graphics/shotwell/default.nix
@@ -37,11 +37,11 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "shotwell";
-  version = "0.32.6";
+  version = "0.32.7";
 
   src = fetchurl {
     url = "mirror://gnome/sources/shotwell/${lib.versions.majorMinor finalAttrs.version}/shotwell-${finalAttrs.version}.tar.xz";
-    sha256 = "sha256-dZek/6yR4YzYFEsS8tCDE6P0Bbs2gkOnMmgm99kqcLY=";
+    sha256 = "sha256-EvMl4BnD5jjCuWFXG8IEd2dh6CYUZ+8btodViJM11fc=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/applications/networking/seaweedfs/default.nix b/pkgs/applications/networking/seaweedfs/default.nix
index 3913c98fea88..4110db3022eb 100644
--- a/pkgs/applications/networking/seaweedfs/default.nix
+++ b/pkgs/applications/networking/seaweedfs/default.nix
@@ -7,16 +7,16 @@
 
 buildGoModule rec {
   pname = "seaweedfs";
-  version = "3.68";
+  version = "3.69";
 
   src = fetchFromGitHub {
     owner = "seaweedfs";
     repo = "seaweedfs";
     rev = version;
-    hash = "sha256-ncA6YXa/focfmPMdEQWbeUxrLhwCqQiPqjP0SovLB2c=";
+    hash = "sha256-stbp4SqBXTZv5QXDwslsg/Y4lhkPGbwcslWZTR3c2v0=";
   };
 
-  vendorHash = "sha256-YgrDzfcp1Lh8bOI1FF7bTBquaShhgE9nZ/+7mvFiQCc=";
+  vendorHash = "sha256-OfLC7a2+YM95F/anrwvhTw4mc72ogBZfLEPDUKMn9IE=";
 
   subPackages = [ "weed" ];
 
diff --git a/pkgs/applications/science/math/qalculate-gtk/default.nix b/pkgs/applications/science/math/qalculate-gtk/default.nix
index e4fc506516fd..a27d7c1ffdb6 100644
--- a/pkgs/applications/science/math/qalculate-gtk/default.nix
+++ b/pkgs/applications/science/math/qalculate-gtk/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "qalculate-gtk";
-  version = "5.1.0";
+  version = "5.2.0";
 
   src = fetchFromGitHub {
     owner = "qalculate";
     repo = "qalculate-gtk";
     rev = "v${finalAttrs.version}";
-    hash = "sha256-yI+8TrNZJt4eJnDX5mk6RozBe2ZeP7sTyAjsgiYQPck=";
+    hash = "sha256-vH4GZaeQ6Ji9aWh8R5B6PE2fBBW7KTyCsFkpgHu6yg8=";
   };
 
   hardeningDisable = [ "format" ];
diff --git a/pkgs/applications/science/math/qalculate-qt/default.nix b/pkgs/applications/science/math/qalculate-qt/default.nix
index 3c4e19d56ebd..5b56fe7581a3 100644
--- a/pkgs/applications/science/math/qalculate-qt/default.nix
+++ b/pkgs/applications/science/math/qalculate-qt/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "qalculate-qt";
-  version = "5.1.0";
+  version = "5.2.0";
 
   src = fetchFromGitHub {
     owner = "qalculate";
     repo = "qalculate-qt";
     rev = "v${finalAttrs.version}";
-    hash = "sha256-gJfIC5HdA10gb/Dh/yhJbkCZfhUnN0zihqyfDjPv6ow=";
+    hash = "sha256-jlzuLLEFi72ElVBJSRikrMMaHIVWKRUAWGyeqzuj7xw=";
   };
 
   nativeBuildInputs = [ qmake intltool pkg-config qttools wrapQtAppsHook ];
diff --git a/pkgs/applications/virtualization/cri-o/default.nix b/pkgs/applications/virtualization/cri-o/default.nix
index 00f17d75d6e5..b52c91e4e1ed 100644
--- a/pkgs/applications/virtualization/cri-o/default.nix
+++ b/pkgs/applications/virtualization/cri-o/default.nix
@@ -15,13 +15,13 @@
 
 buildGoModule rec {
   pname = "cri-o";
-  version = "1.30.2";
+  version = "1.30.3";
 
   src = fetchFromGitHub {
     owner = "cri-o";
     repo = "cri-o";
     rev = "v${version}";
-    hash = "sha256-4v7Pt3WS68h+Un4QNATyQ/o/+8b8nVoNsy6VgwB9Brc=";
+    hash = "sha256-Cv76S2Ylsjzjc6rjCcRJyFjrIrm76I5pqDa1FI+Oq9s=";
   };
   vendorHash = null;
 
diff --git a/pkgs/by-name/an/antimatter-dimensions/package.nix b/pkgs/by-name/an/antimatter-dimensions/package.nix
index 388faf9d41cc..d12c701d355d 100644
--- a/pkgs/by-name/an/antimatter-dimensions/package.nix
+++ b/pkgs/by-name/an/antimatter-dimensions/package.nix
@@ -18,12 +18,12 @@ let
 in
 buildNpmPackage rec {
   pname = "antimatter-dimensions";
-  version = "0-unstable-2024-05-11";
+  version = "0-unstable-2024-06-28";
   src = fetchFromGitHub {
     owner = "IvarK";
     repo = "AntimatterDimensionsSourceCode";
-    rev = "b3a254af60207a03d04473bb81726e921f5b2c61";
-    hash = "sha256-+G9mNilt5Ewja5P+Bt312EcCJknMu7FOMn5b4FseAyQ=";
+    rev = "aeaa7a358f605073172ec9eaa28ff6544edca5a5";
+    hash = "sha256-rXFXoSOtYeLIBQzJ/J+FMSp9CKHOCzq3HxQMd2Bpm3E=";
   };
   nativeBuildInputs = [
     copyDesktopItems
diff --git a/pkgs/by-name/ca/cargo-xwin/package.nix b/pkgs/by-name/ca/cargo-xwin/package.nix
index d31879bad091..3193f7eb3431 100644
--- a/pkgs/by-name/ca/cargo-xwin/package.nix
+++ b/pkgs/by-name/ca/cargo-xwin/package.nix
@@ -7,16 +7,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "cargo-xwin";
-  version = "0.17.0";
+  version = "0.17.1";
 
   src = fetchFromGitHub {
     owner = "rust-cross";
     repo = "cargo-xwin";
     rev = "v${version}";
-    hash = "sha256-3vQ7pM7Ui0H6qWFWOCW4LzDLJq8bcoFEJrpoa4Tzk9g=";
+    hash = "sha256-6IPkNTwSh5aYQUd0MBmAeQ+iv0owxHwgdQWcjsdoEnA=";
   };
 
-  cargoHash = "sha256-4uWPbwntcD4YKdjTlWfMGqM+rddKzaXH1YTX9qLrWrY=";
+  cargoHash = "sha256-lhlqMaqrmEbv2btOf4awtZfEmMVeHGc1JhCpRRlnr90=";
 
   buildInputs = lib.optionals stdenv.isDarwin [
     darwin.apple_sdk.frameworks.Security
diff --git a/pkgs/by-name/ko/kor/package.nix b/pkgs/by-name/ko/kor/package.nix
index 9a8863a30344..b5bc0d1608cf 100644
--- a/pkgs/by-name/ko/kor/package.nix
+++ b/pkgs/by-name/ko/kor/package.nix
@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "kor";
-  version = "0.5.1";
+  version = "0.5.2";
 
   src = fetchFromGitHub {
     owner = "yonahd";
     repo = pname;
     rev = "v${version}";
-    hash = "sha256-mGHSfOW40NTFK1csckSNriCYF2bEQD/M1Zs34i3PptI=";
+    hash = "sha256-iwulXSS6nRwoQUPkQMkBbgJM0ityrGx1T+1s1la/lnM=";
   };
 
   vendorHash = "sha256-9aZy1i0VrDRySt5A5aQHBXa0mPgD+rsyeqQrd6snWKc=";
diff --git a/pkgs/by-name/oh/oh-my-posh/package.nix b/pkgs/by-name/oh/oh-my-posh/package.nix
index bc33e030dead..4321ed571923 100644
--- a/pkgs/by-name/oh/oh-my-posh/package.nix
+++ b/pkgs/by-name/oh/oh-my-posh/package.nix
@@ -6,16 +6,16 @@
 
 buildGoModule rec {
   pname = "oh-my-posh";
-  version = "21.9.1";
+  version = "21.17.2";
 
   src = fetchFromGitHub {
     owner = "jandedobbeleer";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-QzIKxvG1fg6f4Xk18XBXYirvD1cPmvzwXZoaLhSeuTI=";
+    hash = "sha256-9+gzjDxkDMOy7r3M6MVepNJ44HJszyzYs5LrM8x3m6Q=";
   };
 
-  vendorHash = "sha256-N71kM9T8EHh/i8NUSxfPaIRlWk/WADieCkObhVcSyEU=";
+  vendorHash = "sha256-yArae/1TxiQkNCkElFOHdujWzLCfltSV72I8tQKDyw8=";
 
   sourceRoot = "${src.name}/src";
 
diff --git a/pkgs/by-name/pa/paper-plane/package.nix b/pkgs/by-name/pa/paper-plane/package.nix
index dcbee261c461..d308a9325425 100644
--- a/pkgs/by-name/pa/paper-plane/package.nix
+++ b/pkgs/by-name/pa/paper-plane/package.nix
@@ -16,6 +16,7 @@
 , blueprint-compiler
 , libxml2
 , libshumate
+, gst_all_1
 , darwin
 }:
 
@@ -96,6 +97,10 @@ stdenv.mkDerivation {
     libadwaita-paperplane
     tdlib-paperplane
     rlottie-paperplane
+    gst_all_1.gstreamer
+    gst_all_1.gst-libav
+    gst_all_1.gst-plugins-base
+    gst_all_1.gst-plugins-good
   ] ++ lib.optionals stdenv.isDarwin [
     darwin.apple_sdk.frameworks.Foundation
   ];
diff --git a/pkgs/development/libraries/science/math/petsc/filter_mpi_warnings.patch b/pkgs/by-name/pe/petsc/filter_mpi_warnings.patch
similarity index 74%
rename from pkgs/development/libraries/science/math/petsc/filter_mpi_warnings.patch
rename to pkgs/by-name/pe/petsc/filter_mpi_warnings.patch
index f3a34de9304e..79f44558b351 100644
--- a/pkgs/development/libraries/science/math/petsc/filter_mpi_warnings.patch
+++ b/pkgs/by-name/pe/petsc/filter_mpi_warnings.patch
@@ -1,12 +1,12 @@
 diff --git a/src/snes/tutorials/makefile b/src/snes/tutorials/makefile
-index 672a62a..a5fd1c4 100644
+index fa15faad39e..7670e80931e 100644
 --- a/src/snes/tutorials/makefile
 +++ b/src/snes/tutorials/makefile
-@@ -13,6 +13,7 @@ include ${PETSC_DIR}/lib/petsc/conf/rules
+@@ -13,6 +13,7 @@ ex55: ex55.o ex55k.o
  #  these tests are used by the makefile in PETSC_DIR for basic tests of the install and should not be removed
  testex5f: ex5f.PETSc
  	-@${MPIEXEC} -n 1 ${MPIEXEC_TAIL} ./ex5f -snes_rtol 1e-4 > ex5f_1.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex5f_1.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex5f_1.tmp; \
          if (${DIFF} output/ex5f_1.testout ex5f_1.tmp > /dev/null 2>&1) then \
            echo "Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI process"; \
          else \
@@ -14,7 +14,7 @@ index 672a62a..a5fd1c4 100644
          ${MAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} ex5f.rm;
  testex19: ex19.PETSc
  	-@${MPIEXEC} -n 1 ${MPIEXEC_TAIL} ./ex19 -da_refine 3 -pc_type mg -ksp_type fgmres  > ex19_1.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
          if (${DIFF} output/ex19_1.testout ex19_1.tmp > /dev/null 2>&1) then \
            echo "C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process"; \
          else \
@@ -22,7 +22,7 @@ index 672a62a..a5fd1c4 100644
          ${RM} -f ex19_1.tmp;
  testex19_mpi:
  	-@${MPIEXEC} -n 2 ${MPIEXEC_TAIL} ./ex19 -da_refine 3 -pc_type mg -ksp_type fgmres  > ex19_1.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
          if (${DIFF} output/ex19_1.testout ex19_1.tmp > /dev/null 2>&1) then \
            echo "C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI processes"; \
          else \
@@ -30,71 +30,83 @@ index 672a62a..a5fd1c4 100644
  #use unpreconditioned norm because HYPRE device installations use different AMG parameters
  runex19_hypre:
  	-@${MPIEXEC} -n 2 ${MPIEXEC_TAIL} ./ex19 -da_refine 3 -snes_monitor_short -ksp_norm_type unpreconditioned -pc_type hypre > ex19_1.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
            if (${DIFF} output/ex19_hypre.out ex19_1.tmp) then \
-             echo "C/C++ example src/snes/tutorials/ex19 run successfully with hypre"; \
+             echo "C/C++ example src/snes/tutorials/ex19 run successfully with HYPRE"; \
            else  \
 @@ -57,6 +61,7 @@ runex19_hypre:
            ${RM} -f ex19_1.tmp
  runex19_hypre_cuda:
  	-@${MPIEXEC} -n 2 ${MPIEXEC_TAIL} ./ex19 -dm_vec_type cuda -dm_mat_type aijcusparse -da_refine 3 -snes_monitor_short -ksp_norm_type unpreconditioned -pc_type hypre > ex19_1.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
  	   if (${DIFF} output/ex19_hypre.out ex19_1.tmp) then \
-            echo "C/C++ example src/snes/tutorials/ex19 run successfully with hypre/cuda"; \
+            echo "C/C++ example src/snes/tutorials/ex19 run successfully with HYPRE/CUDA"; \
             else  \
 @@ -66,6 +71,7 @@ runex19_hypre_cuda:
  	   ${RM} -f ex19_1.tmp
  runex19_hypre_hip:
  	-@${MPIEXEC} -n 2 ${MPIEXEC_TAIL} ./ex19 -dm_vec_type hip -da_refine 3 -snes_monitor_short -ksp_norm_type unpreconditioned -pc_type hypre > ex19_1.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
  	   if (${DIFF} output/ex19_hypre.out ex19_1.tmp) then \
-            echo "C/C++ example src/snes/tutorials/ex19 run successfully with hypre/hip"; \
+            echo "C/C++ example src/snes/tutorials/ex19 run successfully with HYPRE/HIP"; \
             else \
 @@ -75,6 +81,7 @@ runex19_hypre_hip:
  	   ${RM} -f ex19_1.tmp
  runex19_cuda:
- 	-@${MPIEXEC} -n 1 ${MPIEXEC_TAIL} ./ex19 -snes_monitor -dm_mat_type seqaijcusparse -dm_vec_type seqcuda -pc_type gamg -pc_gamg_esteig_ksp_max_it 10 -ksp_monitor -mg_levels_ksp_max_it 3  > ex19_1.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
+ 	-@${MPIEXEC} -n 1 ${MPIEXEC_TAIL} ./ex19 -snes_monitor -dm_mat_type seqaijcusparse -dm_vec_type seqcuda -pc_type gamg -ksp_monitor -mg_levels_ksp_max_it 1 > ex19_1.tmp 2>&1; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
  	   if (${DIFF} output/ex19_cuda_1.out ex19_1.tmp) then \
-            echo "C/C++ example src/snes/tutorials/ex19 run successfully with cuda"; \
+            echo "C/C++ example src/snes/tutorials/ex19 run successfully with CUDA"; \
             else  \
 @@ -84,6 +91,7 @@ runex19_cuda:
  	   ${RM} -f ex19_1.tmp
  runex19_ml:
  	-@${MPIEXEC} -n 2 ${MPIEXEC_TAIL} ./ex19 -da_refine 3 -snes_monitor_short -pc_type ml > ex19_1.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
  	   if (${DIFF} output/ex19_ml.out ex19_1.tmp) then  \
-            echo "C/C++ example src/snes/tutorials/ex19 run successfully with ml"; \
+            echo "C/C++ example src/snes/tutorials/ex19 run successfully with ML"; \
             else \
 @@ -93,6 +101,7 @@ runex19_ml:
             ${RM} -f ex19_1.tmp
  runex19_fieldsplit_mumps:
  	-@${MPIEXEC} -n 2 ${MPIEXEC_TAIL} ./ex19 -pc_type fieldsplit -pc_fieldsplit_block_size 4 -pc_fieldsplit_type SCHUR -pc_fieldsplit_0_fields 0,1,2 -pc_fieldsplit_1_fields 3 -fieldsplit_0_pc_type lu -fieldsplit_1_pc_type lu -snes_monitor_short -ksp_monitor_short  -fieldsplit_0_pc_factor_mat_solver_type mumps -fieldsplit_1_pc_factor_mat_solver_type mumps > ex19_6.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex19_6.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex19_6.tmp; \
  	   if (${DIFF} output/ex19_fieldsplit_5.out ex19_6.tmp) then  \
-            echo "C/C++ example src/snes/tutorials/ex19 run successfully with mumps"; \
+            echo "C/C++ example src/snes/tutorials/ex19 run successfully with MUMPS"; \
             else  \
 @@ -102,6 +111,7 @@ runex19_fieldsplit_mumps:
             ${RM} -f ex19_6.tmp
  runex19_superlu_dist:
  	-@${MPIEXEC} -n 1 ${MPIEXEC_TAIL} ./ex19 -da_grid_x 20 -da_grid_y 20 -pc_type lu -pc_factor_mat_solver_type superlu_dist > ex19.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex19.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex19.tmp; \
  	   if (${DIFF} output/ex19_superlu.out ex19.tmp) then \
-            echo "C/C++ example src/snes/tutorials/ex19 run successfully with superlu_dist"; \
+            echo "C/C++ example src/snes/tutorials/ex19 run successfully with SuperLU_DIST"; \
             else  \
 @@ -111,6 +121,7 @@ runex19_superlu_dist:
  	   ${RM} -f ex19.tmp
  runex19_suitesparse:
  	-@${MPIEXEC} -n 1 ${MPIEXEC_TAIL} ./ex19 -da_refine 3 -snes_monitor_short -pc_type lu -pc_factor_mat_solver_type umfpack > ex19_1.tmp 2>&1; \
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex19_1.tmp; \
  	   if (${DIFF} output/ex19_suitesparse.out ex19_1.tmp) then \
-            echo "C/C++ example src/snes/tutorials/ex19 run successfully with suitesparse"; \
+            echo "C/C++ example src/snes/tutorials/ex19 run successfully with SuiteSparse"; \
             else \
 @@ -120,6 +131,7 @@ runex19_suitesparse:
  	   ${RM} -f ex19_1.tmp
  runex3k_kokkos: ex3k.PETSc
  	-@OMP_PROC_BIND=false ${MPIEXEC} -n 2 ${MPIEXEC_TAIL} ./ex3k -view_initial -dm_vec_type kokkos -dm_mat_type aijkokkos -use_gpu_aware_mpi 0 -snes_monitor > ex3k_1.tmp 2>&1 ;\
-+        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d' ex3k_1.tmp; \
++        sed -i '/hwloc\/linux/d ; /ERROR scandir(\/sys\/class\/net) failed/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex3k_1.tmp; \
  	if (${DIFF} output/ex3k_1.out ex3k_1.tmp) then \
-           echo "C/C++ example src/snes/tutorials/ex3k run successfully with kokkos-kernels"; \
+           echo "C/C++ example src/snes/tutorials/ex3k run successfully with Kokkos Kernels"; \
          else \
+diff --git a/src/vec/vec/tests/makefile b/src/vec/vec/tests/makefile
+index d1f047820ec..aab400535dd 100644
+--- a/src/vec/vec/tests/makefile
++++ b/src/vec/vec/tests/makefile
+@@ -5,6 +5,7 @@ include ${PETSC_DIR}/lib/petsc/conf/rules
+ 
+ runex47: ex47.PETSc
+ 	-@H5OUT=`mktemp -t petsc.h5.XXXXXX`; ${MPIEXEC} -n 1 ${MPIEXEC_TAIL} ./ex47 -filename $${H5OUT} > ex47_1.tmp 2>&1; \
++       sed -i '/hwloc\/linux/d ; /ERROR opendir(\/sys\/class\/net) failed/d' ex47_1.tmp; \
+ 	   if (${DIFF} output/ex47_1.out ex47_1.tmp) then \
+              echo "C/C++ example src/vec/vec/tests/ex47 run successfully with HDF5"; \
+            else \
diff --git a/pkgs/by-name/pe/petsc/package.nix b/pkgs/by-name/pe/petsc/package.nix
new file mode 100644
index 000000000000..5a547144b491
--- /dev/null
+++ b/pkgs/by-name/pe/petsc/package.nix
@@ -0,0 +1,131 @@
+{
+  lib,
+  stdenv,
+  fetchzip,
+  darwin,
+  gfortran,
+  python3,
+  blas,
+  lapack,
+  mpiSupport ? true,
+  mpi, # generic mpi dependency
+  openssh, # required for openmpi tests
+  petsc-withp4est ? false,
+  hdf5-support ? false,
+  hdf5,
+  metis,
+  parmetis,
+  pkg-config,
+  p4est,
+  zlib, # propagated by p4est but required by petsc
+  petsc-optimized ? false,
+  petsc-scalar-type ? "real",
+  petsc-precision ? "double",
+}:
+
+# This version of PETSc does not support a non-MPI p4est build
+assert petsc-withp4est -> p4est.mpiSupport;
+
+stdenv.mkDerivation rec {
+  pname = "petsc";
+  version = "3.21.0";
+
+  src = fetchzip {
+    url = "https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-${version}.tar.gz";
+    hash = "sha256-2J6jtIKz1ZT9qwN8tuYQNBIeBJdE4Gt9cE3b5rTIeF4=";
+  };
+
+  inherit mpiSupport;
+  withp4est = petsc-withp4est;
+
+  strictDeps = true;
+  nativeBuildInputs = [
+    python3
+    gfortran
+    pkg-config
+  ] ++ lib.optional mpiSupport mpi ++ lib.optional (mpiSupport && mpi.pname == "openmpi") openssh;
+  buildInputs = [
+    blas
+    lapack
+  ] ++ lib.optional hdf5-support hdf5 ++ lib.optional withp4est p4est;
+
+  prePatch = lib.optionalString stdenv.isDarwin ''
+    substituteInPlace config/install.py \
+      --replace /usr/bin/install_name_tool ${darwin.cctools}/bin/install_name_tool
+  '';
+
+  # Both OpenMPI and MPICH get confused by the sandbox environment and spew errors like this (both to stdout and stderr):
+  #     [hwloc/linux] failed to find sysfs cpu topology directory, aborting linux discovery.
+  #     [1684747490.391106] [localhost:14258:0]       tcp_iface.c:837  UCX  ERROR opendir(/sys/class/net) failed: No such file or directory
+  # These messages contaminate test output, which makes the quicktest suite to fail. The patch adds filtering for these messages.
+  patches = [ ./filter_mpi_warnings.patch ];
+
+  preConfigure = ''
+    patchShebangs ./lib/petsc/bin
+    configureFlagsArray=(
+      $configureFlagsArray
+      ${
+        if !mpiSupport then
+          ''
+            "--with-mpi=0"
+          ''
+        else
+          ''
+            "--CC=mpicc"
+            "--with-cxx=mpicxx"
+            "--with-fc=mpif90"
+            "--with-mpi=1"
+            "--with-metis=1"
+            "--with-metis-dir=${metis}"
+            "--with-parmetis=1"
+            "--with-parmetis-dir=${parmetis}"
+          ''
+      }
+      ${lib.optionalString withp4est ''
+        "--with-p4est=1"
+        "--with-zlib-include=${zlib.dev}/include"
+        "--with-zlib-lib=-L${zlib}/lib -lz"
+      ''}
+      ${lib.optionalString hdf5-support ''
+        "--with-hdf5=1"
+        "--with-hdf5-fortran-bindings=1"
+        "--with-hdf5-lib=-L${hdf5}/lib -lhdf5"
+        "--with-hdf5-include=${hdf5.dev}/include"
+      ''}
+      "--with-blas=1"
+      "--with-lapack=1"
+      "--with-scalar-type=${petsc-scalar-type}"
+      "--with-precision=${petsc-precision}"
+      ${lib.optionalString petsc-optimized ''
+        "--with-debugging=0"
+        COPTFLAGS='-O3'
+        FOPTFLAGS='-O3'
+        CXXOPTFLAGS='-O3'
+        CXXFLAGS='-O3'
+      ''}
+    )
+  '';
+
+  hardeningDisable = lib.optionals (!petsc-optimized) [
+    "fortify"
+    "fortify3"
+  ];
+
+  configureScript = "python ./configure";
+
+  enableParallelBuilding = true;
+
+  # This is needed as the checks need to compile and link the test cases with
+  # -lpetsc, which is not available in the checkPhase, which is executed before
+  # the installPhase. The installCheckPhase comes after the installPhase, so
+  # the library is installed and available.
+  doInstallCheck = true;
+  installCheckTarget = "check_install";
+
+  meta = with lib; {
+    description = "Portable Extensible Toolkit for Scientific computation";
+    homepage = "https://petsc.org/release/";
+    license = licenses.bsd2;
+    maintainers = with maintainers; [ cburstedde ];
+  };
+}
diff --git a/pkgs/by-name/pr/proto/package.nix b/pkgs/by-name/pr/proto/package.nix
index 3afa04ec788a..d036124842ff 100644
--- a/pkgs/by-name/pr/proto/package.nix
+++ b/pkgs/by-name/pr/proto/package.nix
@@ -10,16 +10,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "proto";
-  version = "0.37.1";
+  version = "0.37.2";
 
   src = fetchFromGitHub {
     owner = "moonrepo";
     repo = pname;
     rev = "v${version}";
-    hash = "sha256-IqXxjR+M1OCRKUA2HCT6WQvdBMOa0efT8m+drhyQCoE=";
+    hash = "sha256-tzDh8LMxIRYJszgUvAMEWWiSjasSnyz2cOrmNnmaLOg=";
   };
 
-  cargoHash = "sha256-NnTiT1jLMo9EfYau+U0FiAC+V67GnoI90vSsotwniio=";
+  cargoHash = "sha256-JxJlOcTqjQP5MA4em+8jArr0ewCbVibQvLjr+kzn7EM=";
 
   buildInputs = lib.optionals stdenv.isDarwin [
     darwin.apple_sdk.frameworks.SystemConfiguration
diff --git a/pkgs/by-name/st/stats/package.nix b/pkgs/by-name/st/stats/package.nix
index a85e7d36f982..d03e07ffc12e 100644
--- a/pkgs/by-name/st/stats/package.nix
+++ b/pkgs/by-name/st/stats/package.nix
@@ -8,11 +8,11 @@
 
 stdenvNoCC.mkDerivation (finalAttrs: {
   pname = "stats";
-  version = "2.10.18";
+  version = "2.10.19";
 
   src = fetchurl {
     url = "https://github.com/exelban/stats/releases/download/v${finalAttrs.version}/Stats.dmg";
-    hash = "sha256-iBo6rP8V7jGTFaKyd3er3L2EWW3slCyV6eFoJT3w7z8=";
+    hash = "sha256-1mmKpcJJdEiX/KZkE/VnL/xMrNzlq1LSAr5z3CdoPMI=";
   };
 
   sourceRoot = ".";
diff --git a/pkgs/by-name/we/werf/package.nix b/pkgs/by-name/we/werf/package.nix
index 35d1773bec88..282dcc25d0b6 100644
--- a/pkgs/by-name/we/werf/package.nix
+++ b/pkgs/by-name/we/werf/package.nix
@@ -11,16 +11,16 @@
 
 buildGoModule rec {
   pname = "werf";
-  version = "2.6.2";
+  version = "2.6.4";
 
   src = fetchFromGitHub {
     owner = "werf";
     repo = "werf";
     rev = "v${version}";
-    hash = "sha256-jZNypjCmMlDAthoLJiV/82vUbugGi4vP5SNZbasG7YE=";
+    hash = "sha256-dm4rzAP/sp6j8aCsZJbf7TBx7pmjetP2374IAury+kg=";
   };
 
-  vendorHash = "sha256-x64PKLLkvHKW6lbxWSfAQ5xVy6JpGbCAslfz1seUQ2g=";
+  vendorHash = "sha256-3p8zoZyH042jmhOD6WGGcHnHhLqm7gMnlaiRZu1OWmE=";
 
   proxyVendor = true;
 
diff --git a/pkgs/desktops/cinnamon/cinnamon-common/default.nix b/pkgs/desktops/cinnamon/cinnamon-common/default.nix
index df55ba150d5d..a2592cb39a39 100644
--- a/pkgs/desktops/cinnamon/cinnamon-common/default.nix
+++ b/pkgs/desktops/cinnamon/cinnamon-common/default.nix
@@ -71,13 +71,13 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "cinnamon-common";
-  version = "6.2.2";
+  version = "6.2.3";
 
   src = fetchFromGitHub {
     owner = "linuxmint";
     repo = "cinnamon";
     rev = version;
-    hash = "sha256-iivrPSzmvhImfrOD2Ec6BjbtRpHAQs71N/UDSPoZwTE=";
+    hash = "sha256-u5QsUFRXPVsk9T7tVmuOpTaAxdMIJs5yPVcWM1olXz8=";
   };
 
   patches = [
diff --git a/pkgs/desktops/cinnamon/mint-l-theme/default.nix b/pkgs/desktops/cinnamon/mint-l-theme/default.nix
index a9a8a5bd6850..214ebb999785 100644
--- a/pkgs/desktops/cinnamon/mint-l-theme/default.nix
+++ b/pkgs/desktops/cinnamon/mint-l-theme/default.nix
@@ -8,13 +8,13 @@
 
 stdenvNoCC.mkDerivation rec {
   pname = "mint-l-theme";
-  version = "1.9.7";
+  version = "1.9.8";
 
   src = fetchFromGitHub {
     owner = "linuxmint";
     repo = pname;
     rev = version;
-    hash = "sha256-pgb1lkrBRDYgfrLx0/afEuTz+5gZt/IG1u+dn4V7Spo=";
+    hash = "sha256-Jql4NJ8jugy0wi5yT+/Mr5fwxLog37w0VvHhxyMvMlk=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/desktops/cinnamon/mint-themes/default.nix b/pkgs/desktops/cinnamon/mint-themes/default.nix
index e1e22781690b..13db58183cb5 100644
--- a/pkgs/desktops/cinnamon/mint-themes/default.nix
+++ b/pkgs/desktops/cinnamon/mint-themes/default.nix
@@ -7,13 +7,13 @@
 
 stdenvNoCC.mkDerivation rec {
   pname = "mint-themes";
-  version = "2.1.7";
+  version = "2.1.8";
 
   src = fetchFromGitHub {
     owner = "linuxmint";
     repo = pname;
     rev = version;
-    hash = "sha256-pakD7qVlivokFlIBNjibOkneS6WV4BBOBePWSOjVVy0=";
+    hash = "sha256-mkcIhZRaOUom1Rurz/IO646FSF50efLN6xfesPdyVHc=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/desktops/cinnamon/nemo/default.nix b/pkgs/desktops/cinnamon/nemo/default.nix
index 94dacd9be01a..6a9121768054 100644
--- a/pkgs/desktops/cinnamon/nemo/default.nix
+++ b/pkgs/desktops/cinnamon/nemo/default.nix
@@ -24,13 +24,13 @@
 
 stdenv.mkDerivation rec {
   pname = "nemo";
-  version = "6.2.1";
+  version = "6.2.2";
 
   src = fetchFromGitHub {
     owner = "linuxmint";
     repo = pname;
     rev = version;
-    sha256 = "sha256-c6asFiDpFctNn+ap0cRptdFbjv5blTaJqDuzZ1Je+3I=";
+    sha256 = "sha256-afK+iJ/WUtcs8Upid4AkbAZAIs/wimHFlXm717U0LHc=";
   };
 
   patches = [
diff --git a/pkgs/development/compilers/llvm/git/default.nix b/pkgs/development/compilers/llvm/git/default.nix
index ff76aad22a71..d58a31bf8bf7 100644
--- a/pkgs/development/compilers/llvm/git/default.nix
+++ b/pkgs/development/compilers/llvm/git/default.nix
@@ -20,9 +20,9 @@
 # LLVM release information; specify one of these but not both:
 , gitRelease ? {
     version = "19.0.0-git";
-    rev = "a9ac31910db3975d5e92a6265ab29dafd6a4691d";
-    rev-version = "19.0.0-unstable-2024-06-23";
-    sha256 = "sha256-MTt2FU84rgu6FqB9aCO6M54VZexoogkdx5RKS1NzSkk=";
+    rev = "9b9405621bcc55b74d2177c960c21f62cc95e6fd";
+    rev-version = "19.0.0-unstable-2024-06-30";
+    sha256 = "sha256-Tlk+caav7e7H6bha8YQyOl+x2iNk9iH7xKpHQkWQyJ4=";
 }
   # i.e.:
   # {
diff --git a/pkgs/development/libraries/agda/generics/default.nix b/pkgs/development/libraries/agda/generics/default.nix
new file mode 100644
index 000000000000..12815a3617bc
--- /dev/null
+++ b/pkgs/development/libraries/agda/generics/default.nix
@@ -0,0 +1,28 @@
+{ lib, mkDerivation, fetchFromGitHub, standard-library }:
+
+mkDerivation rec {
+  pname = "generics";
+  version = "1.0.1";
+
+  src = fetchFromGitHub {
+    owner = "flupe";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "sha256-B1eT6F0Dp2zto50ulf+K/KYMlMp8Pgc/tO9qkcqn+O8=";
+  };
+
+  buildInputs = [
+    standard-library
+  ];
+
+  # everythingFile = "./README.agda";
+
+  meta = with lib; {
+    description =
+      "Library for datatype-generic programming in Agda";
+    homepage = src.meta.homepage;
+    license = licenses.mit;
+    platforms = platforms.unix;
+    maintainers = with maintainers; [ turion ];
+  };
+}
diff --git a/pkgs/development/libraries/igraph/default.nix b/pkgs/development/libraries/igraph/default.nix
index c55f3ee18661..1e3d2e4923d9 100644
--- a/pkgs/development/libraries/igraph/default.nix
+++ b/pkgs/development/libraries/igraph/default.nix
@@ -26,13 +26,13 @@ assert (blas.isILP64 == lapack.isILP64 &&
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "igraph";
-  version = "0.10.12";
+  version = "0.10.13";
 
   src = fetchFromGitHub {
     owner = "igraph";
     repo = finalAttrs.pname;
     rev = finalAttrs.version;
-    hash = "sha256-ITXkdCyUtuFhgHHmy3P4ZX6GgzyxVUYz4knCCPHGClc=";
+    hash = "sha256-c5yZI5AfaO/NFyy88efu1COb+T2r1LpHhUTfilw2H1U=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/libraries/nss/latest.nix b/pkgs/development/libraries/nss/latest.nix
index 3f45d2e39c79..63a7d2c879ed 100644
--- a/pkgs/development/libraries/nss/latest.nix
+++ b/pkgs/development/libraries/nss/latest.nix
@@ -5,6 +5,6 @@
 #       Example: nix-shell ./maintainers/scripts/update.nix --argstr package cacert
 
 import ./generic.nix {
-  version = "3.101";
-  hash = "sha256-lO+81zYBBFwqcjh4cd/fpiznHZ9rTJpfDW/yF8phYts=";
+  version = "3.101.1";
+  hash = "sha256-KcRiOUbdFnH618MFM6uxmRn+/Jn4QMHtv1BELXrCAX4=";
 }
diff --git a/pkgs/development/libraries/science/math/petsc/default.nix b/pkgs/development/libraries/science/math/petsc/default.nix
deleted file mode 100644
index c07250c660a3..000000000000
--- a/pkgs/development/libraries/science/math/petsc/default.nix
+++ /dev/null
@@ -1,96 +0,0 @@
-{ lib
-, stdenv
-, fetchurl
-, darwin
-, gfortran
-, python3
-, blas
-, lapack
-, mpiSupport ? true
-, mpi                   # generic mpi dependency
-, openssh               # required for openmpi tests
-, petsc-withp4est ? false
-, p4est
-, zlib                  # propagated by p4est but required by petsc
-, petsc-optimized ? false
-, petsc-scalar-type ? "real"
-, petsc-precision ? "double"
-}:
-
-# This version of PETSc does not support a non-MPI p4est build
-assert petsc-withp4est -> p4est.mpiSupport;
-
-stdenv.mkDerivation rec {
-  pname = "petsc";
-  version = "3.19.4";
-
-  src = fetchurl {
-    url = "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${version}.tar.gz";
-    sha256 = "sha256-fJQbcb5Sw7dkIU5JLfYBCdEvl/fYVMl6RN8MTZWLOQY=";
-  };
-
-  inherit mpiSupport;
-  withp4est = petsc-withp4est;
-
-  strictDeps = true;
-  nativeBuildInputs = [ python3 gfortran ]
-    ++ lib.optional mpiSupport mpi
-    ++ lib.optional (mpiSupport && mpi.pname == "openmpi") openssh
-  ;
-  buildInputs = [ blas lapack ]
-    ++ lib.optional withp4est p4est
-  ;
-
-  prePatch = lib.optionalString stdenv.isDarwin ''
-    substituteInPlace config/install.py \
-      --replace /usr/bin/install_name_tool ${darwin.cctools}/bin/install_name_tool
-  '';
-
-  # Both OpenMPI and MPICH get confused by the sandbox environment and spew errors like this (both to stdout and stderr):
-  #     [hwloc/linux] failed to find sysfs cpu topology directory, aborting linux discovery.
-  #     [1684747490.391106] [localhost:14258:0]       tcp_iface.c:837  UCX  ERROR opendir(/sys/class/net) failed: No such file or directory
-  # These messages contaminate test output, which makes the quicktest suite to fail. The patch adds filtering for these messages.
-  patches = [ ./filter_mpi_warnings.patch ];
-
-  preConfigure = ''
-    patchShebangs ./lib/petsc/bin
-    configureFlagsArray=(
-      $configureFlagsArray
-      ${if !mpiSupport then ''
-        "--with-mpi=0"
-      '' else ''
-        "--CC=mpicc"
-        "--with-cxx=mpicxx"
-        "--with-fc=mpif90"
-        "--with-mpi=1"
-      ''}
-      ${lib.optionalString withp4est ''
-        "--with-p4est=1"
-        "--with-zlib-include=${zlib.dev}/include"
-        "--with-zlib-lib=-L${zlib}/lib -lz"
-      ''}
-      "--with-blas=1"
-      "--with-lapack=1"
-      "--with-scalar-type=${petsc-scalar-type}"
-      "--with-precision=${petsc-precision}"
-      ${lib.optionalString petsc-optimized ''
-        "--with-debugging=0"
-        COPTFLAGS='-g -O3'
-        FOPTFLAGS='-g -O3'
-        CXXOPTFLAGS='-g -O3'
-      ''}
-    )
-  '';
-
-  configureScript = "python ./configure";
-
-  enableParallelBuilding = true;
-  doCheck = stdenv.hostPlatform == stdenv.buildPlatform;
-
-  meta = with lib; {
-    description = "Portable Extensible Toolkit for Scientific computation";
-    homepage = "https://www.mcs.anl.gov/petsc/index.html";
-    license = licenses.bsd2;
-    maintainers = with maintainers; [ cburstedde ];
-  };
-}
diff --git a/pkgs/development/python-modules/frigidaire/default.nix b/pkgs/development/python-modules/frigidaire/default.nix
index 89140e97a432..7bf6d5a6d2a7 100644
--- a/pkgs/development/python-modules/frigidaire/default.nix
+++ b/pkgs/development/python-modules/frigidaire/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "frigidaire";
-  version = "0.18.19";
+  version = "0.18.21";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "bm1549";
     repo = "frigidaire";
     rev = "refs/tags/${version}";
-    hash = "sha256-wbYijFiMk+EIAjD6+mKt/c6JwN9oQLfeL1Pk30RbKKs=";
+    hash = "sha256-7fpVFKhLXBD0ec2mGfbFHygaH8BtOIOd5NoYz03IKp8=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/polyswarm-api/default.nix b/pkgs/development/python-modules/polyswarm-api/default.nix
index cf514b853511..6b45f328598f 100644
--- a/pkgs/development/python-modules/polyswarm-api/default.nix
+++ b/pkgs/development/python-modules/polyswarm-api/default.nix
@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "polyswarm-api";
-  version = "3.7.0";
+  version = "3.8.0";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -24,7 +24,7 @@ buildPythonPackage rec {
     owner = "polyswarm";
     repo = "polyswarm-api";
     rev = "refs/tags/${version}";
-    hash = "sha256-zEh8qus/+3mcAaY+SK6FLT6wB6UtGLKPoR1WVZdn9vM=";
+    hash = "sha256-AH0DJYmZL+EejIkhy97JyekdB6ywf49kka0C2sDbdlY=";
   };
 
   pythonRelaxDeps = [ "future" ];
diff --git a/pkgs/development/python-modules/sacn/default.nix b/pkgs/development/python-modules/sacn/default.nix
index 58e87ec60ed1..4153fe1aa811 100644
--- a/pkgs/development/python-modules/sacn/default.nix
+++ b/pkgs/development/python-modules/sacn/default.nix
@@ -7,14 +7,14 @@
 
 buildPythonPackage rec {
   pname = "sacn";
-  version = "1.9.1";
+  version = "1.10.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-ppXWRBZVm4QroxZ19S388sRuI5zpaDgJrJqhnwefr3k=";
+    hash = "sha256-Z2Td/tdXYfQ9/QvM1NeT/OgQ/TYa3CQtWo8O1Dl3+Ao=";
   };
 
   # no tests
diff --git a/pkgs/development/python-modules/tencentcloud-sdk-python/default.nix b/pkgs/development/python-modules/tencentcloud-sdk-python/default.nix
index bed497e92a33..b0b70c71d97e 100644
--- a/pkgs/development/python-modules/tencentcloud-sdk-python/default.nix
+++ b/pkgs/development/python-modules/tencentcloud-sdk-python/default.nix
@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "tencentcloud-sdk-python";
-  version = "3.0.1177";
+  version = "3.0.1178";
   pyproject = true;
 
   disabled = pythonOlder "3.9";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     owner = "TencentCloud";
     repo = "tencentcloud-sdk-python";
     rev = "refs/tags/${version}";
-    hash = "sha256-sGbbeyKwDjXvV+LFozBclS2lltrZnafBOy62GP6XDMA=";
+    hash = "sha256-5G+XVi1wmvWanBgra6JokLmfPaYIEETjQOAWV/mqTAI=";
   };
 
   build-system = [ setuptools ];
diff --git a/pkgs/development/python-modules/tesla-fleet-api/default.nix b/pkgs/development/python-modules/tesla-fleet-api/default.nix
index 4be63b1b4b4b..bcd58d8cc9e9 100644
--- a/pkgs/development/python-modules/tesla-fleet-api/default.nix
+++ b/pkgs/development/python-modules/tesla-fleet-api/default.nix
@@ -10,7 +10,7 @@
 
 buildPythonPackage rec {
   pname = "tesla-fleet-api";
-  version = "0.6.1";
+  version = "0.6.2";
   pyproject = true;
 
   disabled = pythonOlder "3.10";
@@ -19,7 +19,7 @@ buildPythonPackage rec {
     owner = "Teslemetry";
     repo = "python-tesla-fleet-api";
     rev = "refs/tags/v${version}";
-    hash = "sha256-dCkk0ikg8KvB7us4mEcUQ1q3JIRoNbSE6STVZXRBErE=";
+    hash = "sha256-kkyRQ2cYldx4vK5hAo6LOr+k3YqJihKreE+DTNVHYdM=";
   };
 
   build-system = [ setuptools ];
diff --git a/pkgs/development/tools/analysis/checkov/default.nix b/pkgs/development/tools/analysis/checkov/default.nix
index 1590dc2a8543..03cfd87449be 100644
--- a/pkgs/development/tools/analysis/checkov/default.nix
+++ b/pkgs/development/tools/analysis/checkov/default.nix
@@ -6,14 +6,14 @@
 
 python3.pkgs.buildPythonApplication rec {
   pname = "checkov";
-  version = "3.2.156";
+  version = "3.2.159";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "bridgecrewio";
     repo = "checkov";
     rev = "refs/tags/${version}";
-    hash = "sha256-RcYDvxqAyvXFdVo3NqISNJ2aDCUsRwN73r3ilc3IjCk=";
+    hash = "sha256-ZWJf499yr4aOrNHNaoaQ+t4zxCUZrw3FzEytEkGcAnk=";
   };
 
   patches = [ ./flake8-compat-5.x.patch ];
diff --git a/pkgs/development/tools/kubie/default.nix b/pkgs/development/tools/kubie/default.nix
index ee0e34f144c9..0fe6c0fb43df 100644
--- a/pkgs/development/tools/kubie/default.nix
+++ b/pkgs/development/tools/kubie/default.nix
@@ -2,16 +2,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "kubie";
-  version = "0.23.0";
+  version = "0.23.1";
 
   src = fetchFromGitHub {
     rev = "v${version}";
     owner = "sbstp";
     repo = "kubie";
-    sha256 = "sha256-3sFtYUFUYYHDqF22XJ+pmg+fW2f03IS5CgIXjWg2+Bo=";
+    sha256 = "sha256-TjZ8n88uldCNfpdReE/SYPkj0m6bBA2lI4SyNAhPFFM=";
   };
 
-  cargoHash = "sha256-9eUGGDBoeF6EM3Np95rFHU3luGuVZk5iE4kIYlUnEEw=";
+  cargoHash = "sha256-AkeKAPzgKDvnS+eyAh8MJfPOPFF+v6Rje3eXu7LM6Pk=";
 
   nativeBuildInputs = [ installShellFiles ];
 
diff --git a/pkgs/development/tools/misc/act/default.nix b/pkgs/development/tools/misc/act/default.nix
index a8c253e4333c..1c91797b9dd9 100644
--- a/pkgs/development/tools/misc/act/default.nix
+++ b/pkgs/development/tools/misc/act/default.nix
@@ -5,16 +5,16 @@
 
 buildGoModule rec {
   pname = "act";
-  version = "0.2.63";
+  version = "0.2.64";
 
   src = fetchFromGitHub {
     owner = "nektos";
     repo = pname;
     rev = "refs/tags/v${version}";
-    hash = "sha256-umYP/U1UjqWbF1YDZYbQrlMubhxr80FFBDS1NeiI9wI=";
+    hash = "sha256-r/d961IQVZgKh1eT7tFE1KFVwMhp7E8z+jV1AaqBtiQ=";
   };
 
-  vendorHash = "sha256-Dt6V1zngSra4ZMSboHzreqwxgH5ovMIB+Bq3eWK6tjA=";
+  vendorHash = "sha256-FveFo78LuTFKEch/5uqdwksS6c7MLbl+xQvZGSVmTko=";
 
   doCheck = false;
 
diff --git a/pkgs/os-specific/linux/nvidia-x11/builder.sh b/pkgs/os-specific/linux/nvidia-x11/builder.sh
index aa614aec1283..dea9ab721a95 100755
--- a/pkgs/os-specific/linux/nvidia-x11/builder.sh
+++ b/pkgs/os-specific/linux/nvidia-x11/builder.sh
@@ -217,8 +217,10 @@ installPhase() {
                     --set-rpath $out/lib:$libPath $bin/bin/$i
             fi
         done
-        # FIXME: needs PATH and other fixes
-        # install -Dm755 nvidia-bug-report.sh $bin/bin/nvidia-bug-report.sh
+        substituteInPlace nvidia-bug-report.sh \
+          --replace /bin/grep grep \
+          --replace /bin/ls ls
+        install -Dm755 nvidia-bug-report.sh $bin/bin/nvidia-bug-report.sh
     fi
 
     runHook postInstall
diff --git a/pkgs/servers/misc/gobgpd/default.nix b/pkgs/servers/misc/gobgpd/default.nix
index abc04b539558..05cdfec4278f 100644
--- a/pkgs/servers/misc/gobgpd/default.nix
+++ b/pkgs/servers/misc/gobgpd/default.nix
@@ -5,13 +5,13 @@
 
 buildGoModule rec {
   pname = "gobgpd";
-  version = "3.27.0";
+  version = "3.28.0";
 
   src = fetchFromGitHub {
     owner = "osrg";
     repo = "gobgp";
     rev = "refs/tags/v${version}";
-    hash = "sha256-RxBAnElmQkrkMuIC0UpneJXN1OiPhaTPm/tYvc8QSg8=";
+    hash = "sha256-HdGRZrMukIQLxTmwTVB/zUlnrhDjq5b6ree7aqx8pRE=";
   };
 
   vendorHash = "sha256-wrgRQwisOHAhvRbvGXMW5VWkQuEifCwCo3usuxLie4A=";
diff --git a/pkgs/servers/sql/dolt/default.nix b/pkgs/servers/sql/dolt/default.nix
index dd8a8005a50a..8271d9ab760b 100644
--- a/pkgs/servers/sql/dolt/default.nix
+++ b/pkgs/servers/sql/dolt/default.nix
@@ -2,18 +2,18 @@
 
 buildGoModule rec {
   pname = "dolt";
-  version = "1.41.0";
+  version = "1.41.1";
 
   src = fetchFromGitHub {
     owner = "dolthub";
     repo = "dolt";
     rev = "v${version}";
-    sha256 = "sha256-IeLG2IRHGrx5F3tIcvilhgC9BUFHpIpbzTo6vdQj+ZE=";
+    sha256 = "sha256-f2diF3mC+OlyCJ5mifC5ueQD2yWuHTGBMZiNvgUReGM=";
   };
 
   modRoot = "./go";
   subPackages = [ "cmd/dolt" ];
-  vendorHash = "sha256-bqTw4k2WWE7vsp36Ldexnp/eoFOBUL5po8lZzsbv7D4=";
+  vendorHash = "sha256-3VP1uQ6AIZna1JH4L86JkW0udbE6miN1dVrQR4hE1u4=";
   proxyVendor = true;
   doCheck = false;
 
diff --git a/pkgs/tools/audio/spotdl/default.nix b/pkgs/tools/audio/spotdl/default.nix
index 6e94c1be721c..0131d64ba824 100644
--- a/pkgs/tools/audio/spotdl/default.nix
+++ b/pkgs/tools/audio/spotdl/default.nix
@@ -20,6 +20,9 @@ python3.pkgs.buildPythonApplication rec {
 
   pythonRelaxDeps = true;
 
+  # Remove when https://github.com/spotDL/spotify-downloader/issues/2119 is fixed
+  patches = [ ./is_lrc_valid-failure.patch ];
+
   dependencies = with python3.pkgs; [
     bandcamp-api
     beautifulsoup4
diff --git a/pkgs/tools/audio/spotdl/is_lrc_valid-failure.patch b/pkgs/tools/audio/spotdl/is_lrc_valid-failure.patch
new file mode 100644
index 000000000000..e419bca125d2
--- /dev/null
+++ b/pkgs/tools/audio/spotdl/is_lrc_valid-failure.patch
@@ -0,0 +1,65 @@
+From 0c1357470450d98b3b7fe5444ac460ba9ee04425 Mon Sep 17 00:00:00 2001
+From: Jeremy Cutler <jerz4lunch@users.noreply.github.com>
+Date: Mon, 17 Jun 2024 02:19:33 -0700
+Subject: [PATCH 1/2] Update lrc.py for updated function in python-syncedlyrics
+
+See syncedlyrics commit: [here](https://github.com/moehmeni/syncedlyrics/commit/64d3f9de3d17bec69cbc3b3b5acd1ab847fde4b2)
+---
+ spotdl/utils/lrc.py | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/spotdl/utils/lrc.py b/spotdl/utils/lrc.py
+index 726fefbee..e59490b53 100644
+--- a/spotdl/utils/lrc.py
++++ b/spotdl/utils/lrc.py
+@@ -7,7 +7,7 @@
+ from pathlib import Path
+
+ from syncedlyrics import search as syncedlyrics_search
+-from syncedlyrics.utils import is_lrc_valid, save_lrc_file
++from syncedlyrics.utils import has_translation, save_lrc_file
+
+ from spotdl.types.song import Song
+
+@@ -25,7 +25,7 @@ def generate_lrc(song: Song, output_file: Path):
+     - output_file: Path to the output file
+     """
+
+-    if song.lyrics and is_lrc_valid(song.lyrics):
++    if song.lyrics and has_translation(song.lyrics):
+         lrc_data = song.lyrics
+     else:
+         try:
+
+From bfa9456049132e64b5c83655bdeae7c9dcd1b532 Mon Sep 17 00:00:00 2001
+From: Jeremy Cutler <jerz4lunch@users.noreply.github.com>
+Date: Wed, 26 Jun 2024 18:06:59 -0700
+Subject: [PATCH 2/2] Update lrc.py
+
+Seems to have fixed the update of syncedlyrics to 1.0.0
+---
+ spotdl/utils/lrc.py | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/spotdl/utils/lrc.py b/spotdl/utils/lrc.py
+index e59490b53..cf7478214 100644
+--- a/spotdl/utils/lrc.py
++++ b/spotdl/utils/lrc.py
+@@ -7,7 +7,7 @@
+ from pathlib import Path
+
+ from syncedlyrics import search as syncedlyrics_search
+-from syncedlyrics.utils import has_translation, save_lrc_file
++from syncedlyrics.utils import has_translation, Lyrics
+
+ from spotdl.types.song import Song
+
+@@ -34,7 +34,7 @@ def generate_lrc(song: Song, output_file: Path):
+             lrc_data = None
+
+     if lrc_data:
+-        save_lrc_file(str(output_file.with_suffix(".lrc")), lrc_data)
++        Lyrics.save_lrc_file(str(output_file.with_suffix(".lrc")), lrc_data)
+         logger.debug("Saved lrc file for %s", song.display_name)
+     else:
+         logger.debug("No lrc file found for %s", song.display_name)
diff --git a/pkgs/tools/misc/open-pdf-sign/default.nix b/pkgs/tools/misc/open-pdf-sign/default.nix
index 76d957d340ad..1b87ca87728e 100644
--- a/pkgs/tools/misc/open-pdf-sign/default.nix
+++ b/pkgs/tools/misc/open-pdf-sign/default.nix
@@ -7,12 +7,12 @@
 }:
 
 stdenv.mkDerivation (finalAttrs: {
-  version = "0.2.0";
+  version = "0.2.1";
   pname = "open-pdf-sign";
 
   src = fetchurl {
     url = "https://github.com/open-pdf-sign/open-pdf-sign/releases/download/v${finalAttrs.version}/open-pdf-sign.jar";
-    hash = "sha256-W4WymhjLrHtNK5XY8aahpZOIIh/Qp9scE3zybXF6/9o=";
+    hash = "sha256-jtaEystCiZUK93HkVPuWzAUISO4RMMxjMmFbooWZJGU=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/tools/misc/topgrade/default.nix b/pkgs/tools/misc/topgrade/default.nix
index 3b632348f263..8b037912a80d 100644
--- a/pkgs/tools/misc/topgrade/default.nix
+++ b/pkgs/tools/misc/topgrade/default.nix
@@ -10,16 +10,16 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "topgrade";
-  version = "14.0.1";
+  version = "15.0.0";
 
   src = fetchFromGitHub {
     owner = "topgrade-rs";
     repo = "topgrade";
     rev = "v${version}";
-    hash = "sha256-opTMV+OH8PR9SxBWj1o8xSngK0QdindDcXyd6TRjdvI=";
+    hash = "sha256-w3JsMUuARJ5UtA8Io3kzeNjXoa014YzyT8hHPwEgljQ=";
   };
 
-  cargoHash = "sha256-pgYrUZAxoyllQp1HuVhbLR3za+Gx0l8Z2/Zq/KCOKZg=";
+  cargoHash = "sha256-DEZlpt9mOy/BOnvkkINz2+q3hUx2aBSzBfOVxv43w6g=";
 
   nativeBuildInputs = [
     installShellFiles
diff --git a/pkgs/tools/networking/gobgp/default.nix b/pkgs/tools/networking/gobgp/default.nix
index 8969ef275267..3e89da8ed7fe 100644
--- a/pkgs/tools/networking/gobgp/default.nix
+++ b/pkgs/tools/networking/gobgp/default.nix
@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "gobgp";
-  version = "3.27.0";
+  version = "3.28.0";
 
   src = fetchFromGitHub {
     owner = "osrg";
     repo = "gobgp";
     rev = "v${version}";
-    sha256 = "sha256-RxBAnElmQkrkMuIC0UpneJXN1OiPhaTPm/tYvc8QSg8=";
+    sha256 = "sha256-HdGRZrMukIQLxTmwTVB/zUlnrhDjq5b6ree7aqx8pRE=";
   };
 
   vendorHash = "sha256-wrgRQwisOHAhvRbvGXMW5VWkQuEifCwCo3usuxLie4A=";
diff --git a/pkgs/tools/networking/hysteria/default.nix b/pkgs/tools/networking/hysteria/default.nix
index 0d3dcb3cabcd..e7408559567f 100644
--- a/pkgs/tools/networking/hysteria/default.nix
+++ b/pkgs/tools/networking/hysteria/default.nix
@@ -4,16 +4,16 @@
 }:
 buildGoModule rec {
   pname = "hysteria";
-  version = "2.4.5";
+  version = "2.5.0";
 
   src = fetchFromGitHub {
     owner = "apernet";
     repo = pname;
     rev = "app/v${version}";
-    hash = "sha256-dRVTlH+g/pwwacrdof3n8OeLMsgZswpOwvtAx13bZGo=";
+    hash = "sha256-vtGJRPQBOO8Ig794FJ3gTrR0LOZdWH1vAc7IcZSq/SE=";
   };
 
-  vendorHash = "sha256-nrcREOp92jIB8CzdOevYufpIN6l9Tcg/B4tT15d5TOE=";
+  vendorHash = "sha256-1VLws98/iAW8BnxOhbshp01D6+kb4CJOvncC5floN5o=";
   proxyVendor = true;
 
   ldflags =
diff --git a/pkgs/tools/security/cariddi/default.nix b/pkgs/tools/security/cariddi/default.nix
index b4e07a622c24..acada9b12567 100644
--- a/pkgs/tools/security/cariddi/default.nix
+++ b/pkgs/tools/security/cariddi/default.nix
@@ -5,16 +5,16 @@
 
 buildGoModule rec {
   pname = "cariddi";
-  version = "1.3.4";
+  version = "1.3.5";
 
   src = fetchFromGitHub {
     owner = "edoardottt";
     repo = "cariddi";
     rev = "refs/tags/v${version}";
-    hash = "sha256-Hgz+/DEoCo4lxcFkawQgIc3ct7cc2NwpAnfBtZQruf0=";
+    hash = "sha256-mRrUTRknax3b4hs3frQMzg0GyB3WjMDZJk0RQSAC88U=";
   };
 
-  vendorHash = "sha256-GgJyYDnlaFybf3Gu1gVcA12HkA0yUIjYEFj0G83GVGQ=";
+  vendorHash = "sha256-ML1aLbrYhs2IxnN2ywKFOpvAV6yuYb8GI+dtoxwJl4A=";
 
   ldflags = [
     "-w"
diff --git a/pkgs/tools/system/mediawriter/default.nix b/pkgs/tools/system/mediawriter/default.nix
index 8740a9b8a1e1..e2ff1f610782 100644
--- a/pkgs/tools/system/mediawriter/default.nix
+++ b/pkgs/tools/system/mediawriter/default.nix
@@ -11,13 +11,13 @@
 
 stdenv.mkDerivation rec {
   pname = "mediawriter";
-  version = "5.1.1";
+  version = "5.1.2";
 
   src = fetchFromGitHub {
     owner = "FedoraQt";
     repo = "MediaWriter";
     rev = "refs/tags/${version}";
-    hash = "sha256-I4q9VARQiZf+Qz83EToyUj+eS3CTPsxEw0paACS8lmE=";
+    hash = "sha256-KyABM3XIHvd9kT7aayYivGw6kjLf55Gpkk041BQ4yw0=";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/tools/virtualization/jumppad/default.nix b/pkgs/tools/virtualization/jumppad/default.nix
index 97b3477c4242..d99e1164d9aa 100644
--- a/pkgs/tools/virtualization/jumppad/default.nix
+++ b/pkgs/tools/virtualization/jumppad/default.nix
@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "jumppad";
-  version = "0.12.0";
+  version = "0.12.1";
 
   src = fetchFromGitHub {
     owner = "jumppad-labs";
     repo = "jumppad";
     rev = version;
-    hash = "sha256-eO/BZ59MZI1zaRCkbhBks55Jbf1i0M4XFHjAV03xp9k=";
+    hash = "sha256-jG/XTMkedgDSncCW7YbII3g3ieB1i0Z9cOEVfZiczHI=";
   };
   vendorHash = "sha256-FPM0q1ZVDfo00Z6QEXqtqfx77qkq5HhB+3vF9z9zrM0=";
 
diff --git a/pkgs/top-level/agda-packages.nix b/pkgs/top-level/agda-packages.nix
index 1e0e6e0a2d58..d1097a48327b 100644
--- a/pkgs/top-level/agda-packages.nix
+++ b/pkgs/top-level/agda-packages.nix
@@ -35,5 +35,7 @@ let
     agdarsec = callPackage ../development/libraries/agda/agdarsec { };
 
     _1lab = callPackage ../development/libraries/agda/1lab { };
+
+    generics = callPackage ../development/libraries/agda/generics { };
   };
 in mkAgdaPackages Agda
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index de04e4c8c3ae..bde5dd3853a0 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -38036,8 +38036,6 @@ with pkgs;
     p4est-sc = p4est-sc-dbg;
   };
 
-  petsc = callPackage ../development/libraries/science/math/petsc { };
-
   parmetis = callPackage ../development/libraries/science/math/parmetis { };
 
   QuadProgpp = callPackage ../development/libraries/science/math/QuadProgpp { };