From 13f27af73b4687fa1b4497b36443698c53da31a2 Mon Sep 17 00:00:00 2001
From: Gaetan Lepage <gaetan@glepage.com>
Date: Sat, 11 Jul 2026 20:29:25 +0000
Subject: [PATCH] python3Packages.pytensor: 3.1.2 -> 3.1.3

Diff: https://github.com/pymc-devs/pytensor/compare/rel-3.1.2...rel-3.1.3

Changelog: https://github.com/pymc-devs/pytensor/releases/tag/rel-3.1.3
---
 .../python-modules/pytensor/default.nix         | 17 ++++++++++++++---
 1 file changed, 14 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/python-modules/pytensor/default.nix b/pkgs/development/python-modules/pytensor/default.nix
index c6115797ae12..0741e59af6ba 100644
--- a/pkgs/development/python-modules/pytensor/default.nix
+++ b/pkgs/development/python-modules/pytensor/default.nix
@@ -33,7 +33,7 @@
 
 buildPythonPackage (finalAttrs: {
   pname = "pytensor";
-  version = "3.1.2";
+  version = "3.1.3";
   pyproject = true;
   __structuredAttrs = true;
 
@@ -44,9 +44,16 @@ buildPythonPackage (finalAttrs: {
     postFetch = ''
       sed -i 's/git_refnames = "[^"]*"/git_refnames = " (tag: ${finalAttrs.src.tag})"/' $out/pytensor/_version.py
     '';
-    hash = "sha256-kKfbVSWsaA9ytii4GXeEmE+Oq8Qi7QNUOozgemqJI+k=";
+    hash = "sha256-9Apjyg+wmAWrK7hMSF54b1u/3TT0GGitDlyF6rQA4OY=";
   };
 
+  # DeprecationWarning: scipy.linalg: the `lwork` keyword is deprecated and no longer in use as of
+  # SciPy 1.18.0 and will be removed in SciPy 1.20.0
+  postPatch = ''
+    substituteInPlace pytensor/link/numba/dispatch/linalg/decomposition/qr.py \
+      --replace-fail "lwork=lwork," ""
+  '';
+
   build-system = [
     setuptools
     cython
@@ -85,7 +92,11 @@ buildPythonPackage (finalAttrs: {
     rm -rf pytensor
   '';
 
-  disabledTests = lib.optionals stdenv.hostPlatform.isDarwin [
+  disabledTests = [
+    # AssertionError: Not equal to tolerance rtol=0.0001, atol=0
+    "test_Searchsorted"
+  ]
+  ++ lib.optionals stdenv.hostPlatform.isDarwin [
     # Numerical assertion error
     # tests.unittest_tools.WrongValue: WrongValue
     "test_op_sd"