diff --git a/pkgs/development/libraries/sqlite/default.nix b/pkgs/development/libraries/sqlite/default.nix
index 77ce108e267a..e9fbc06090d4 100644
--- a/pkgs/development/libraries/sqlite/default.nix
+++ b/pkgs/development/libraries/sqlite/default.nix
@@ -17,13 +17,13 @@ in
 
 stdenv.mkDerivation rec {
   pname = "sqlite${optionalString interactive "-interactive"}";
-  version = "3.39.0";
+  version = "3.39.1";
 
   # nixpkgs-update: no auto update
   # NB! Make sure to update ./tools.nix src (in the same directory).
   src = fetchurl {
     url = "https://sqlite.org/2022/sqlite-autoconf-${archiveVersion version}.tar.gz";
-    sha256 = "sha256-6QvK723VgT/N7k6Gf2tl88m/0K7A8QF/nzu84eTtCeI=";
+    sha256 = "sha256-h8jnp/oMaKso4gi6SfOiKlYADb9TpvkCBuK8WEOTHMQ=";
   };
 
   outputs = [ "bin" "dev" "out" ];
diff --git a/pkgs/development/libraries/sqlite/tools.nix b/pkgs/development/libraries/sqlite/tools.nix
index e3aaf4499534..df898863b0e8 100644
--- a/pkgs/development/libraries/sqlite/tools.nix
+++ b/pkgs/development/libraries/sqlite/tools.nix
@@ -4,12 +4,12 @@ let
   archiveVersion = import ./archive-version.nix lib;
   mkTool = { pname, makeTarget, description, homepage, mainProgram }: stdenv.mkDerivation rec {
     inherit pname;
-    version = "3.39.0";
+    version = "3.39.1";
 
     # nixpkgs-update: no auto update
     src = assert version == sqlite.version; fetchurl {
       url = "https://sqlite.org/2022/sqlite-src-${archiveVersion version}.zip";
-      sha256 = "sha256-s1hfN90Qbbs9RsjBei0nX5pLh9+MRQm9LWpbQAMkJuY=";
+      sha256 = "sha256-Nmx6u+5dvoiCzXV4phpu0/XQjF9t41NaAAMSW0ZGzFc=";
     };
 
     nativeBuildInputs = [ unzip ];