From d6c4f3a4d5658f940c8799cf08d9fd81ef34c133 Mon Sep 17 00:00:00 2001
From: "R. Ryantm" <ryantm-bot@ryantm.com>
Date: Fri, 11 Aug 2023 04:40:20 +0000
Subject: [PATCH 1/4] python310Packages.bx-python: 0.9.0 -> 0.10.0

---
 pkgs/development/python-modules/bx-python/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/bx-python/default.nix b/pkgs/development/python-modules/bx-python/default.nix
index 085fc210f1b8..91924c46353e 100644
--- a/pkgs/development/python-modules/bx-python/default.nix
+++ b/pkgs/development/python-modules/bx-python/default.nix
@@ -3,14 +3,14 @@
 
 buildPythonPackage rec {
   pname = "bx-python";
-  version = "0.9.0";
+  version = "0.10.0";
   disabled = pythonOlder "3.6";
 
   src = fetchFromGitHub {
     owner = "bxlab";
     repo = "bx-python";
     rev = "refs/tags/v${version}";
-    hash = "sha256-Pi4hV3FatCXoXY3nNgqm5UfWYIrpP/v5PzzCi3gmIbE=";
+    hash = "sha256-j2GKj2IGDBk4LBnISRx6ZW/lh5VSdQBasC0gCRj0Fiw=";
   };
 
   nativeBuildInputs = [ cython ];

From 9083fe415bd7f7296da127274de97ecda9c07d23 Mon Sep 17 00:00:00 2001
From: Fabian Affolter <mail@fabian-affolter.ch>
Date: Fri, 11 Aug 2023 09:37:36 +0200
Subject: [PATCH 2/4] python310Packages.bx-python: add changelog to meta

---
 pkgs/development/python-modules/bx-python/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/bx-python/default.nix b/pkgs/development/python-modules/bx-python/default.nix
index 91924c46353e..3d26ca5078e8 100644
--- a/pkgs/development/python-modules/bx-python/default.nix
+++ b/pkgs/development/python-modules/bx-python/default.nix
@@ -29,9 +29,9 @@ buildPythonPackage rec {
   '';
 
   meta = with lib; {
+    description = "Tools for manipulating biological data, particularly multiple sequence alignments";
     homepage = "https://github.com/bxlab/bx-python";
-    description =
-      "Tools for manipulating biological data, particularly multiple sequence alignments";
+    changelog = "https://github.com/bxlab/bx-python/releases/tag/v${version}";
     license = licenses.mit;
     maintainers = [ maintainers.jbedo ];
     platforms = [ "x86_64-linux" ];

From 00c02166f5283f705c165668bc97e0f413723e19 Mon Sep 17 00:00:00 2001
From: Fabian Affolter <mail@fabian-affolter.ch>
Date: Fri, 11 Aug 2023 09:39:30 +0200
Subject: [PATCH 3/4] python310Packages.bx-python: equalize content

---
 .../python-modules/bx-python/default.nix      | 36 +++++++++++++++----
 1 file changed, 29 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/python-modules/bx-python/default.nix b/pkgs/development/python-modules/bx-python/default.nix
index 3d26ca5078e8..56a8a9a151e9 100644
--- a/pkgs/development/python-modules/bx-python/default.nix
+++ b/pkgs/development/python-modules/bx-python/default.nix
@@ -1,5 +1,14 @@
-{ lib, fetchFromGitHub, buildPythonPackage, pythonOlder, numpy, cython, zlib, six
-, python-lzo, nose }:
+{ lib
+, fetchFromGitHub
+, buildPythonPackage
+, pythonOlder
+, numpy
+, cython
+, zlib
+, six
+, python-lzo
+, nose
+}:
 
 buildPythonPackage rec {
   pname = "bx-python";
@@ -13,10 +22,23 @@ buildPythonPackage rec {
     hash = "sha256-j2GKj2IGDBk4LBnISRx6ZW/lh5VSdQBasC0gCRj0Fiw=";
   };
 
-  nativeBuildInputs = [ cython ];
-  buildInputs = [ zlib ];
-  propagatedBuildInputs = [ numpy six python-lzo ];
-  nativeCheckInputs = [ nose ];
+  nativeBuildInputs = [
+    cython
+  ];
+
+  buildInputs = [
+    zlib
+  ];
+
+  propagatedBuildInputs = [
+    numpy
+    six
+    python-lzo
+  ];
+
+  nativeCheckInputs = [
+    nose
+  ];
 
   postInstall = ''
     cp -r scripts/* $out/bin
@@ -33,7 +55,7 @@ buildPythonPackage rec {
     homepage = "https://github.com/bxlab/bx-python";
     changelog = "https://github.com/bxlab/bx-python/releases/tag/v${version}";
     license = licenses.mit;
-    maintainers = [ maintainers.jbedo ];
+    maintainers = with maintainers; [ jbedo ];
     platforms = [ "x86_64-linux" ];
   };
 }

From 8193aa415d442739a6bd022fff3b38706aadbd7b Mon Sep 17 00:00:00 2001
From: Fabian Affolter <mail@fabian-affolter.ch>
Date: Fri, 11 Aug 2023 09:41:58 +0200
Subject: [PATCH 4/4] python310Packages.bx-python: update disabled

- add format
---
 pkgs/development/python-modules/bx-python/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/python-modules/bx-python/default.nix b/pkgs/development/python-modules/bx-python/default.nix
index 56a8a9a151e9..5fc21676d261 100644
--- a/pkgs/development/python-modules/bx-python/default.nix
+++ b/pkgs/development/python-modules/bx-python/default.nix
@@ -5,7 +5,6 @@
 , numpy
 , cython
 , zlib
-, six
 , python-lzo
 , nose
 }:
@@ -13,7 +12,9 @@
 buildPythonPackage rec {
   pname = "bx-python";
   version = "0.10.0";
-  disabled = pythonOlder "3.6";
+  format = "setuptools";
+
+  disabled = pythonOlder "3.7";
 
   src = fetchFromGitHub {
     owner = "bxlab";
@@ -32,7 +33,6 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [
     numpy
-    six
     python-lzo
   ];
 
@@ -43,7 +43,7 @@ buildPythonPackage rec {
   postInstall = ''
     cp -r scripts/* $out/bin
 
-    # This is a small hack; the test suit uses the scripts which need to
+    # This is a small hack; the test suite uses the scripts which need to
     # be patched. Linking the patched scripts in $out back to the
     # working directory allows the tests to run
     rm -rf scripts